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オントロジー

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オントロジー [2011/09/27 09:20 +0900] (現在)
ライン 1: ライン 1:
 +====== オントロジー ======
  
 +  * オントロジー集、検索
 +    * [[http://​www.obofoundry.org/​|The Open Biological and Biomedical Ontologies (OBO)]]
 +    * [[http://​bioportal.bioontology.org/​|BioPortal (NCBO'​s ontology repository)]]
 +
 +  * トップレベルオントロジー
 +     * [[http://​www.ifomis.org/​bfo/​|BFO]]
 +     * [[http://​www.ei.sanken.osaka-u.ac.jp/​hozo/​onto_library/​upperOnto.htm|YAMATO]]
 +     * [[http://​www.loa-cnr.it/​DOLCE.html|DOLCE]]
 +     * [[http://​www.ontologyportal.org/​index.html|SUMO]]
 +
 +  * [[http://​www.geneontology.org|the Gene Ontology]]
 +    * [[http://​amigo.geneontology.org/​cgi-bin/​amigo/​go.cgi|Amigo browser]]
 +    * [[http://​www.ebi.ac.uk/​QuickGO//​|QuickGO]]
 +    * [[http://​www.geneontology.org/​GO.slims.shtml|GO slims]]
 +      * [[http://​www.geneontology.org/​GO_slims/​goslim_generic.obo|Generic GO slim]]
 +      * [[http://​www.geneontology.org/​GO_slims/​goslim_plant.obo|Plant slim]]
 +      * [[http://​www.geneontology.org/​GO_slims/​goslim_candida.obo|Candida albicans slim]]
 +      * [[http://​www.geneontology.org/​GO_slims/​goslim_pir.obo|Protein Information Resource slim]]
 +      * [[http://​www.geneontology.org/​GO_slims/​goslim_pombe.obo|Schizosaccharomyces pombe slim]]
 +      * [[http://​www.geneontology.org/​GO_slims/​goslim_yeast.obo|Yeast slim]]
 +      * [[http://​www.ebi.ac.uk/​GOA/​|UniProtKB-GOA]]
 +
 +  * 解剖学オントロジー
 +    * [[http://​www.geneontology.org/​|Cellular component]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=xenopus_anatomy|Xenopus anatomy and development (XAO)]]
 +    * [[http://​www.bioontology.org/​wiki/​index.php/​CARO:​Main_Page|Common Anatomy Reference Ontology (CARO)]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=teleost_anatomy|Teleost Anatomy Ontology (TAO)]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=worm_anatomy|C. elegans gross anatomy]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=spider_anatomy|Spider Ontology]]
 +    * [[http://​www.informatics.jax.org/​searches/​AMA_form.shtml|Mouse adult gross anatomy (MA)]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=emap|Mouse gross anatomy and development]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=human-dev-anat-abstract2|Human developmental anatomy, abstract version, v2]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=fly_anatomy|Drosophila gross anatomy]]
 +    * [[http://​www.yeastgenome.org/​fungi/​fungal_anatomy_ontology/​|Fungal gross anatomy]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=vertebrate_anatomy|Vertebrate Musculoskeletal Anatomy Ontology]]
 +    * [[http://​www.plantontology.org/​|Plant Growth and Development Stage]]
 +    * [[http://​www.obofoundry.org/​wiki/​index.php/​UBERON:​Main_Page|Uber anatomy ontology]]
 +    * [[http://​www.plantontology.org/​|Plant Anatomy Ontology]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=spatial|Spatial Ontology]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=worm_development|C. elegans development]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=fly_development|Drosophila development]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=human-dev-anat-staged|Human developmental anatomy, timed version]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=dictyostelium_discoideum_anatomy|Dictyostelium discoideum anatomy]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=fma_lite|Foundational Model of Anatomy (subset) (FMA)]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=medaka_anatomy_development|Medaka fish anatomy and development]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=cell|Cell type]]
 +    * [[http://​www.plantontology.org/​|Plant Ontology]]
 +
 +  * 行動オントロジー
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=neuro_behavior_ontology|Neuro Behavior Ontology]]
 +
 +  * 生化学オントロジー
 +    * [[http://​www.ebi.ac.uk/​chebi/​|Chemical entities of biological interest (ChEBI)]]
 +    * [[http://​www.ebi.ac.uk/​sbo/​main/​|Systems Biology (SBO)]]
 +
 +  * 生物学的機能オントロジー
 +    * [[http://​www.geneontology.org/​|Molecular function]]
 +  * 生物学的過程オントロジー
 +    * [[http://​www.geneontology.org/​|Biological process]]
 +    * [[http://​rgd.mcw.edu/​tools/​ontology/​ont_search.cgi|Pathway ontology]]
 +    * [[http://​www.inoh.org/​ontology-viewer/​|Event (INOH pathway ontology)]]
 +
 +  * 配列オントロジー
 +    * [[http://​www.sequenceontology.org/​index.html|Sequence types and features (SO)]]
 +
 +  * 環境オントロジー
 +    * [[http://​www.gramene.org/​plant_ontology/#​to|Plant Environmental Conditions]]
 +    * [[http://​environmentontology.org/​|Environment Ontology]]
 +
 +  * 実験オントロジー
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=psi-ms|Mass spectrometry (PSI-MS)]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=image|Biological imaging methods]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=nmr|NMR-instrument specific component of metabolomics investigations]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=evidence_code|Evidence codes]]
 +    * [[http://​mged.sourceforge.net/​ontologies/​MGEDontology.php|Microarray experimental conditions]]
 +    * [[http://​www.psidev.info/​|Protein-protein interaction (PSI-MI)]]
 +    * [[http://​obi-ontology.org/​page/​Main_Page|Ontology for biomedical investigations]]
 +    * [[http://​www.evocontology.org/​|eVOC (Expressed Sequence Annotation for Humans)]]
 +
 +  * 衛生・健康オントロジー
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=vaccine|Vaccine ontology]]
 +    * [[http://​do-wiki.nubic.northwestern.edu/​index.php/​Main_Page|Pathogen transmission]]
 +    * [[http://​www.pathbase.net/​|Mouse pathology]]
 +    * [[http://​ncit.nci.nih.gov/​ncitbrowser/​|NCI Thesaurus]]
 +    * [[http://​do-wiki.nubic.northwestern.edu/​index.php/​Main_Page|Human disease]]
 +    * [[http://​symptomontologywiki.igs.umaryland.edu/​wiki/​index.php/​Main_Page|Symptom Ontology]]
 +    * [[http://​www.bioontology.org/​wiki/​index.php/​Infectious_Disease_Ontology|Infectious disease]]
 +    * [[http://​influenzaontologywiki.igs.umaryland.edu/​wiki/​index.php/​Main_Page|Influenza Ontology]]
 +
 +  * 医学オントロジー
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=OGMS|Ontology for General Medical Science]]
 +
 +  * 分子構造オントロジー
 +    * [[http://​code.google.com/​p/​rnao/​|RNA ontology]]
 +
 +  * 脂質オントロジー
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=lipid|Lipid Ontology]]
 +
 +  * 表現型オントロジー
 +    * [[http://​obofoundry.org/​wiki/​index.php/​PATO:​Main_Page|Phenotypic quality (PATO)]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=worm_phenotype|C. elegans phenotype]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=ascomycete_phenotype|Ascomycete phenotype ontology]]
 +    * [[http://​www.informatics.jax.org/​searches/​MP_form.shtml|Mammalian phenotype]]
 +    * [[http://​www.gramene.org/​plant_ontology/​|Plant Trait Ontology]]
 +    * [[http://​www.human-phenotype-ontology.org/​index.php/​hpo_home.html|human phenotype ontology]]
 +
 +  * タンパク質オントロジー
 +    * [[http://​pir.georgetown.edu/​pro/​|PRotein Ontology (PRO)]]
 +    * [[http://​www.inoh.org/​ontology-viewer/​|Molecule role (INOH Protein name/family name ontology)]]
 +    * [[http://​www.ebi.ac.uk/​RESID/​|Protein covalent bond]]
 +    * [[http://​www.ebi.ac.uk/​interpro/​index.html|Protein Domains]]
 +    * [[http://​lsdis.cs.uga.edu/​projects/​glycomics/​propreo/​|Proteomics data and process provenance (ProPreO)]]
 +    * [[http://​psidev.info/​index.php?​q=node/​104|Protein modification (PSI-MOD)]]
 +
 +  * 分類学オントロジー
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=teleost_taxonomy|Teleost taxonomy]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=ncbi_taxonomy|NCBI organismal classification]]
 +    * [[http://​www.obofoundry.org/​cgi-bin/​detail.cgi?​id=fly_taxonomy|Fly taxonomy]]
 +    * [[http://​phenoscape.org/​wiki/​Taxonomic_Rank_Vocabulary|Taxonomic rank vocabulary]]
 +
 +  * その他のオントロジー
 +    * [[http://​www.ebi.ac.uk/​Rebholz-srv/​GRO/​GRO.html|Gene Regulation Ontology]]
 +    * [[http://​code.google.com/​p/​information-artifact-ontology/​|Information Artifact Ontology]]
 +    * [[http://​psidev.info/​index.php?​q=node/​312|sepCV:​ Sample processing and separations controlled vocabulary]]
オントロジー.txt · 最終更新: 2011/09/27 09:20 +0900 (外部編集)