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chemble-rdf_by_bio2rdf

ChEMBLE-RDF

  • Molecule(化合物)の情報
## molecule
SELECT DISTINCT *
WHERE
{
?molecule <http://www.w3.org/2000/01/rdf-schema#subClassOf> <http://www.ifomis.org/bfo/1.1/snap#MaterialEntity>
      OPTIONAL {?molecule <http://www.w3.org/2002/07/owl#equivalentClass> ?equivalentClassOfMolecule}
      OPTIONAL {?molecule <http://www.w3.org/2000/01/rdf-schema#label> ?label}
      OPTIONAL {?molecule <http://purl.org/spar/cito/citesAsDataSource> ?dataSourceOfMolecule}
      OPTIONAL {?molecule <http://www.blueobelisk.org/chemistryblogs/smiles> ?smiles}
      OPTIONAL {?molecule <http://www.blueobelisk.org/chemistryblogs/inchi> ?inchi}
      OPTIONAL {?molecule <http://www.blueobelisk.org/chemistryblogs/inchikey> ?inchikey}
}
  • Activity(活性)の情報
## activity
SELECT DISTINCT *
WHERE
{
?activity <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://rdf.farmbio.uu.se/chembl/onto/#Activity>
      OPTIONAL {?activity <http://purl.org/spar/cito/citesAsDataSource> ?dataSourceOfActivity}
      OPTIONAL {?activity <http://rdf.farmbio.uu.se/chembl/onto/#forMolecule> ?molecule}
      OPTIONAL {?activity <http://rdf.farmbio.uu.se/chembl/onto/#standardValue> ?standardValue}
      OPTIONAL {?activity <http://rdf.farmbio.uu.se/chembl/onto/#onAssay> ?Assay}
      OPTIONAL {?activity <http://rdf.farmbio.uu.se/chembl/onto/#type> ?typeOfActivity}
}
  • Assayの情報
## assay
SELECT DISTINCT *
{
?assay <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://rdf.farmbio.uu.se/chembl/onto/#Assay>
         OPTIONAL {?assay <http://www.w3.org/2002/07/owl#equivalentClass> ?equivalentClassOfAssay}
         OPTIONAL {?assay <http://rdf.farmbio.uu.se/chembl/onto/#hasDescription> ?description}
         OPTIONAL {?assay <http://purl.org/spar/cito/citesAsDataSource> ?dataSourceOfAssay}
         OPTIONAL {?assay <http://rdf.farmbio.uu.se/chembl/onto/#hasTargetScore> ?targetScore}
         OPTIONAL {?assay <http://rdf.farmbio.uu.se/chembl/onto/#hasAssayType> ?assayType}
         OPTIONAL {?assay <http://rdf.farmbio.uu.se/chembl/onto/#hasTarget> ?targetOfAssay}
}
  • Target(ターゲットタンパク質)の情報
## target
SELECT DISTINCT *
WHERE
{
?target <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> <http://rdf.farmbio.uu.se/chembl/onto/#Target>
      OPTIONAL {?target <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> ?typeOfTarget}
      OPTIONAL {?target <http://www.w3.org/2002/07/owl#sameAs> ?sameAs}
      OPTIONAL {?target <http://purl.org/dc/elements/1.1/title> ?title}
      OPTIONAL {?target <http://www.w3.org/2002/07/owl#equivalentClass> ?equivalentClassOfTarget}
      OPTIONAL {?target <http://rdf.farmbio.uu.se/chembl/onto/#organism> ?organism}
      OPTIONAL {?target <http://rdf.farmbio.uu.se/chembl/onto/#hasTaxonomy> ?taxonomy}
      OPTIONAL {?target <http://rdf.farmbio.uu.se/chembl/onto/#classL1> ?class1}
}
chemble-rdf_by_bio2rdf.txt · 最終更新: 2012/11/15 18:48 +0900 by kushidat