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protein_families_and_domains_databases_interpro_prints_prosite_pfam_and_prodom_by_bio2rdf

Protein families and domains databases (InterPro, Prints, PROSITE, Pfam and ProDom) (by Bio2RDF):!: SPARQL Endpoint

  • InterPro, PROSITE, Pfam, GO, PDB, Pubmed等
select DISTINCT ?s ?lsid ?url ?label ?name ?interPro ?prosite ?pfam ?isA ?go ?pdb ?uniprot ?pubmed
where 
{
?s <http://www.w3.org/1999/02/22-rdf-syntax-ns#type> ?o
       FILTER(regex(?o, "http://bio2rdf.org/ns/interpro#Annotation") || regex(?o, "http://bio2rdf.org/ns/prosite#Site") || regex(?o, "http://bio2rdf.org/ns/prodom#Domain") || regex(?o, "http://bio2rdf.org/ns/pfam#Annotation"))
          OPTIONAL {?s <http://bio2rdf.org/ns/bio2rdf#lsid> ?lsid}
          OPTIONAL {?s <http://bio2rdf.org/ns/bio2rdf#url> ?url}
          OPTIONAL {?s <http://www.w3.org/2000/01/rdf-schema#label> ?label}
          OPTIONAL {?s <http://bio2rdf.org/ns/bio2rdf#name> ?name} 
          OPTIONAL {?s <http://bio2rdf.org/ns/bio2rdf#xInterPro> ?interPro}
          OPTIONAL {?s <http://bio2rdf.org/ns/bio2rdf#xProsite> ?prosite}
          OPTIONAL {?s <http://bio2rdf.org/ns/bio2rdf#xPfam> ?pfam}
          OPTIONAL {?s <http://bio2rdf.org/ns/bio2rdf#isA> ?isA}
          OPTIONAL {?s <http://bio2rdf.org/ns/bio2rdf#xGO> ?go}
          OPTIONAL {?s <http://bio2rdf.org/ns/bio2rdf#xPDB> ?pdb}
          OPTIONAL {?s <http://bio2rdf.org/ns/bio2rdf#xUniProt> ?uniprot}
          OPTIONAL {?s <http://bio2rdf.org/ns/bio2rdf#xPubMed> ?pubmed}
}
protein_families_and_domains_databases_interpro_prints_prosite_pfam_and_prodom_by_bio2rdf.txt · 最終更新: 2012/11/29 22:09 +0900 by kushidat